Filters to decide which observation to run

Pulsar name for PSRDB search. Returns only observations with this pulsar name.

type: string

Start UTC for PSRDB search. Returns only observations after this UTC timestamp.

type: string

End UTC for PSRDB search. Returns only observations before this UTC timestamp.

type: string

Project short name (e.g. PTA) for PSRDB search. Return only observations matching this Project short code.

type: string

Path to CSV file containing the observations to process in the format described in the documentation

type: string

Define where the pipeline should find input data and save output data.

Base directory of input archive files

type: string
default: /fred/oz005/timing

The output directory where the results will be saved. You have to use absolute paths to storage on Cloud infrastructure.

type: string
default: /fred/oz005/timing_processed

Path to the ephemris which will overwrite the default described above. Recommended to only be used for single observations.

type: string

Path to the template which will overwrite the default described above. Recommended to only be used for single observations.

type: string

Email address for completion summary.

type: string
pattern: ^([a-zA-Z0-9_\-\.]+)@([a-zA-Z0-9_\-\.]+)\.([a-zA-Z]{2,5})$
hidden
type: string

Options to change the pipeline logic

Use the previously created calibrated and cleaned archive in the output directory.

type: boolean

Use first and last 8 second subints of observation archives.

type: boolean

Remove edge frequency channels of the archive before decimating.

type: boolean
default: true

Additionally create decimations and ToAs with the mode nsub type (most common observation duration used for nsub length). Default True.

type: boolean
default: true

Additionally create decimations with the all nsub type (use all available nsubs). Default True.

type: boolean
default: true

Additionally create decimations and ToAs with the max nsub type (maximum number of nsubs with at least the ‘toa_sn’ signal-to-noise ratio). Default True.

type: boolean
default: true

Desired ToA S/N ratio, used to calculate the max nsub type to use

type: integer
default: 12

Comma separated list of nchans to frequency scrunch the data into

type: string
default: 1,8,16,32,928

Comma separated list of number of polarisations to scrunch the data into..

type: string
default: 1,4

Maximum number of channels of residuals to upload. Large number of channels slows down the upload and are often not required.

type: integer
default: 32

Options for interacting with the meertime dataportal pulsars.org.au

Upload result to the database

type: boolean
default: true

URL for interacting with the database API. Can be set with the $PSRDB_URL environment variable.

type: string

Token taken from environment variable and obtained using get_ingest_token.sh or get_token.sh. Can be set with the $PSRDB_TOKEN environment variable.

type: string

Parameters used to describe centralised config profiles. These should not be edited.

Git commit id for Institutional configs.

hidden
type: string
default: master

Base directory for Institutional configs.

hidden
type: string
default: https://raw.githubusercontent.com/nf-core/configs/master

Institutional config name.

hidden
type: string

Institutional config description.

hidden
type: string

Institutional config contact information.

hidden
type: string

Institutional config URL link.

hidden
type: string

Set the top limit for requested resources for any single job.

Maximum number of CPUs that can be requested for any single job.

hidden
type: integer
default: 16

Maximum amount of memory that can be requested for any single job.

hidden
type: string
default: 250.GB
pattern: ^\d+(\.\d+)?\.?\s*(K|M|G|T)?B$

Maximum amount of time that can be requested for any single job.

hidden
type: string
default: 240.h
pattern: ^(\d+\.?\s*(s|m|h|d|day)\s*)+$

Less common options for the pipeline, typically set in a config file.

type: boolean

Display help text.

hidden
type: boolean

Display version and exit.

hidden
type: boolean

Method used to save pipeline results to output directory.

hidden
type: string

Email address for completion summary, only when pipeline fails.

hidden
type: string
pattern: ^([a-zA-Z0-9_\-\.]+)@([a-zA-Z0-9_\-\.]+)\.([a-zA-Z]{2,5})$

Send plain-text email instead of HTML.

hidden
type: boolean

Do not use coloured log outputs.

hidden
type: boolean

Incoming hook URL for messaging service

hidden
type: string

Boolean whether to validate parameters against the schema at runtime

hidden
type: boolean
default: true
hidden
type: boolean
hidden
type: string
hidden
type: string
default: genomes,validationSchemaIgnoreParams,manifest,validation-schema-ignore-params
hidden
type: string
default: /fred/oz005/timing_processed/pipeline_info
hidden
type: boolean