Description

Transforms sequences (extract ID, filter by length, remove gaps, reverse complement…)

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

fastx

:file

Input fasta/fastq file

*.{fsa,fas,fa,fasta,fastq,fq,fsa.gz,fas.gz,fa.gz,fasta.gz,fastq.gz,fq.gz}

Output

name:type
description
pattern

fastx

meta

:map

Groovy Map containing sample information e.g. [ id:'sample1' ]

${prefix}.*

:file

Output fasta/fastq file

*.{fasta,fasta.gz,fastq,fastq.gz}

versions

versions.yml

:file

File containing software versions

versions.yml

Tools

included in
funcscangenomeqcproteinfamilies
maintainer
Github user GallVp
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