create an hmm profile from a multiple sequence alignment
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
alignment
:file
multiple sequence alignment in fasta, clustal, stockholm or phylip format
*
mxfile
read substitution score matrix, for use when building profiles from single sequences (—singlemx option)
hmm
Gzipped HMM file
*.{hmm.gz}
*.hmm.gz
hmmbuildout
*.hmmbuild.txt
HMM build output
versions
versions.yml
File containing software versions
Biosequence analysis using profile hidden Markov models
