De novo assembler for single molecule sequencing reads
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
reads
:file
Input reads from Oxford Nanopore or PacBio data in FASTA/FASTQ format.
*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}
mode
:string
Flye mode depending on the input data (source and error rate)
--pacbio-raw|--pacbio-corr|--pacbio-hifi|--nano-raw|--nano-corr|--nano-hq
fasta
*.fasta.gz
Assembled FASTA file
gfa
*.gfa.gz
Repeat graph in gfa format
gv
*.gv.gz
Repeat graph in gv format
txt
*.txt
Extra information and statistics about resulting contigs
log
*.log
Flye log file
json
*.json
Flye parameters
versions
versions.yml
File containing software versions
Fast and accurate de novo assembler for single molecule sequencing reads
