calculate clusters of highly similar sequences
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
db
:file
The input sequence database. Supported formats are FASTA and DIAMOND (.dmnd) format.
*.{dmnd,fa,faa,fasta}(.gz)
tsv
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
*.tsv
a 2-column tabular file with the representative accession as the first column and the member sequence accession as the second column
versions
versions.yml
File containing software versions
Accelerated BLAST compatible local sequence aligner
