cellpose segments cells in images
meta
:map
Groovy Map containing sample information (sample id)
image
:file
tif file for ready for segmentation
*.{tif,tiff}
model
Optional input file. Cellpose 2 model trained by user using human-in-the-loop approach.
mask
Groovy Map containing sample information [sample id]
*masks.tif
labelled mask output from cellpose in tif format
*.{tif, tiff}
flows
*flows.tif
cell flow output from cellpose
*.{tif}
versions
versions.yml
File containing software versions
cellpose is an anatomical segmentation algorithm written in Python 3 by Carsen Stringer and Marius Pachitariu
