Description

Provides different type of statistics in text format from a GFF/GTF annotation file

Input

name:type
description
pattern

meta

:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

gff

:file

Annotation file in GFF3/GTF format

*.{gff, gtf}

Output

name:type
description
pattern

stats_txt

meta

:map

Groovy Map containing sample information

*.txt

:file

Output of Statistics execution

*.{txt}

versions

versions.yml

:file

File containing software versions

versions.yml

Tools

agat
GPL v3

AGAT is a toolkit for manipulation and getting information from GFF/GTF files