Fixes and standardizes GFF/GTF files and outputs a cleaned GFF/GTF file
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gxf
:file
Annotation file in GFF3/GTF format
*.{gff, gtf}
output_gff
Groovy Map containing sample information
*.agat.gff
Cleaned annotation file in GFF3 format
*.{gff}
log
*.log
Log file of the conversion process
*.{log}
versions
versions.yml
File containing software versions
AGAT is a toolkit for manipulation and getting information from GFF/GTF files
